Blinded by the light
Entrapment: 3min 36sec
The Bone Collector: 5min 42sec and 1hr 34min
*A Beautiful Day in the Neighborhood
Times are rough estimates as I saw the movie in theaters and didn't have a time stamp.
I've also heard that the documentary about Mr. Rogers (Won't You Be My Neighbor) talks about 9/11. I've never seen the movie myself so I can't confirm or give you any times.
*King Kong (1976)
Shot of WTCs at 1hr 42min and 1hr 43min
Shot at 1hr 20min
The Last Seduction has another WTC shot that wasn't on the list at 41min 36sec.
Rocketman (2019) has 2 shots of the WTCs. One day and one night shot both somewhere between 1hr 41min-1hr 43min.
There is a shot of the WTCs in the movie Us. Around the first 3 minutes of the movie during a Hands Across America commercial.
Also there is a missing shot of the WTCs in the movie It Could Happen To You at 1hr 37min
The Broken Circle Breakdown
There is shots of 9/11 on a tv at 27min 12sec
I also found a couple of posters
One is a movie called Q. It is from 1982 and it has a dragon/demon type thing sitting on the Chrystler buildingand has the WTCs in the background.
Also the other movie poster is for The New York Ripper. If you Google Image the movie poster there are several ones in various languages but alot of them have the WTCs in the background.